Software

Open tools built for breeding and plant science, free to use and to adapt.

Breeding Panel Analysis

An open Shiny tool that takes a germplasm or breeding panel from VCF and passport files to population structure, multi-environment trials, AMMI and GGE biplots, genome scans and genomic prediction.

Everything on this page is released under an open licence, with the source and the analysis code public. If you use one of these tools in work you publish, a citation is welcome and a note about what did or did not work for you is more welcome still.