CV

Academic CV of Kidanemaryam Wagaw Reta.

Contact Information

Name Kidanemaryam Wagaw Reta
Professional Title Plant Physiologist | Plant Biochemist | Predictive Modeling | Systems Crop Scientist
Email kidane.et@gmail.com

Professional Summary

Plant scientist with a PhD in plant biotechnology, specializing in crop physiology, plant metabolism, trait characterization under complex abiotic stresses, multi-omics integration, and predictive modeling for climate-resilient crop performance.

Experience

  • 2025 - Present

    Be'er Sheva, Israel

    Postdoctoral Researcher in Plant Metabolomics and Physiology
    Ben-Gurion University of the Negev
    • Lead an OIV-funded integrative phenotyping project combining UAV-based thermal imaging, physiology, metabolomics, gene expression, and AI-assisted predictive modeling to identify climate-resilient varietal performance.
    • Design above- and below-ground crop physiology experiments using gas exchange, chlorophyll fluorescence, ionomics, plant biochemistry, and multi-year field and controlled-environment phenotyping.
    • Generate and analyze metabolomics and volatilomics datasets using GC-MS, LC-MS, HS-SPME-GC-MS, multivariate statistics, network analysis, and machine learning.
    • Integrate multi-omics datasets to resolve carbon metabolism, ion partitioning, root-zone processes, and biochemical regulation underlying abiotic stress responses.
  • 2021 - Present

    Addis Ababa, Ethiopia

    Researcher II, Plant Molecular Breeder
    Bio and Emerging Technology Institute
    • Led crop improvement research for dryland production systems, integrating physiological phenotyping, quantitative genetics, molecular tools, and stress-resilient trait validation.
    • Applied genomic-assisted selection and molecular breeding approaches to accelerate selection and deployment of improved crop varieties.
    • Coordinated multi-institutional, internationally funded research programs including BIOINNOVATE Africa.
  • 2014 - 2021

    Addis Ababa, Ethiopia

    Junior Researcher to Associate Researcher, Plant Breeder
    Ethiopian Institute of Agricultural Research
    • Designed and implemented breeding schemes, crossing, hybridization, and heterosis exploitation that led to three improved sorghum varieties and contributed to eight more released varieties as part of a team.
    • Led large-scale phenotyping and physiological characterization of sorghum germplasm across multi-environment trials.
    • Integrated field phenotyping, SNP-based genotyping, genotype-phenotype association analysis, and data-driven selection pipelines.
  • 2012 - 2014

    Amhara Sayint, Ethiopia

    Crop Production and Protection Expert, System Agronomist
    Amhara Bureau of Agriculture, Amhara Sayint Agricultural Office
    • Provided field-level agronomic diagnostics and advisory support for maize, wheat, barley, and haricot bean production.
    • Conducted seed quality assessment and certification for haricot bean production systems targeting local and export markets.

Education

  • 2021 - 2025

    Be'er Sheva, Israel

    PhD
    Ben-Gurion University of the Negev
    Plant Metabolomics
    • Thesis: Responses of Vitis vinifera grafts to combined abiotic stress: Physiology and Metabolism.
    • Designed and executed multi-season experiments across field, greenhouse, and semi-controlled systems to quantify grapevine responses to combined salinity, heatwave, and water stress.
    • Integrated physiology with metabolomics, transcriptomics, ionomics, phenomics, and root-shoot phenotyping to identify mechanisms and traits associated with stress resilience.
    • Developed predictive and network-based analyses linking environmental variables, physiological traits, molecular responses, and crop performance.
  • 2016 - 2018

    Ethiopia

    MSc
    Jimma University
    Plant Breeding
    • Thesis: Assessment of heterotic performance and combining ability of Ethiopian elite sorghum (Sorghum bicolor (L.) Moench) lines.
    • Designed field-based experiments for hybrid sorghum development and evaluated heterosis, combining ability, stability, and genotype-by-environment interactions.
  • 2009 - 2012

    Ethiopia

    BSc, Great Distinction
    Haramaya University
    Plant Sciences

Interests

Crop stress physiology: Photosynthesis, gas exchange, chlorophyll fluorescence, heatwave stress, salinity, water deficit, stress thresholds
Plant metabolomics and multi-omics: GC-MS, LC-MS, ionomics, transcriptomics, phenomics, metabolic network analysis, pathway analysis
Root-shoot interactions: Root system architecture, ion selectivity, rootstock-mediated traits, plant-soil interactions, belowground phenotyping
Predictive crop performance: Machine learning, UAV thermal sensing, high-throughput phenotyping, AI-assisted forecasting, climate resilience

Publications

Projects

  • Integrative metabolomics, physiology, and predictive modeling in Vitis vinifera under elevated temperature

    OIV-funded project linking physiology, metabolomics, UAV-based thermal phenotyping, gene expression, and AI-assisted forecasting to identify resilient grapevine varietal performance.

    • Lead role / PI
    • Funded by the International Organisation of Vine and Wine
  • Small-scale community biorefining of sorghum for food, sugar, and biomaterials in rainfed areas of Eastern Africa

    Multi-institutional project focused on sorghum-based value chains and dryland production systems.

    • Coordinator
    • Funded by BIOINNOVATE Africa
  • Climate-smart interventions for smallholder farmers in Ethiopia

    Collaborative CultiAF-2 project with the University of Queensland and regional research institutes.

    • Co-PI
    • Funded by IDRC and ACIAR
  • Modernizing Ethiopian Agricultural Research in Crop Improvement

    MERCI crop improvement initiative with the University of Queensland and regional research institutes.

    • Component 2 focal person
    • Funded by the Bill & Melinda Gates Foundation

Awards

  • 2023
    Research grant
    International Organisation of Vine and Wine

    OIV grant for integrative grapevine phenotyping and predictive modeling research.

  • 2025
    AKIS Publication Prize
    Ben-Gurion University of the Negev
  • 2024
    MASOK research grant
    Ben-Gurion University of the Negev
  • 2024
    Travel grant
    Prism Charitable Trust, Ben-Gurion University of the Negev
  • 2022
    Tamar Golan Africa Center Award
    Ben-Gurion University of the Negev
  • 2016
    Silver Medal recognition
    7th Ethiopian Science, Technology and Innovation Awards
  • 2012
    Distinction Honor Award
    Haramaya University

Skills

Crop physiology and phenotyping: Gas exchange, LI-COR, chlorophyll fluorescence, MicroPAM, root phenotyping, root system architecture, shoot physiology
Metabolomics and molecular phenotyping: GC-MS, LC-MS, HS-SPME-GC-MS, ICP-OES, metabolite identification, spectral curation, transcriptomics integration
Computational biology and data science: R, Python, machine learning, predictive modeling, network analysis, PCA, PLS-DA, sPLS-DA, GxE analysis
Research operations: Experimental design, multi-environment trials, SOPs, technical reports, ELN workflows, mentoring, project coordination

Languages

Amharic : Native
English : Fluent

Professional Service

  • Reviewer for Cogent Food & Agriculture, Journal of Crop Improvement, African Journal of Plant Science, African Journal of Agricultural Research, African Journal of Biotechnology, Plant Physiology and Biochemistry, Scientia Horticulturae, and The Plant Cell.
  • Member of the Ethiopian Biotechnology Society and the Crop Science Society of Ethiopia.

References

  • Will be provided upon request